Pyleoclim
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Working with Pyleoclim
Installing Pyleoclim
Pyleoclim User API
Tutorials
Advanced functionalities
Pyleoclim Utilities API (pyleoclim.utils)
Getting Involved
Citing Pyleoclim
Contributing to Pyleoclim
Pyleoclim
Index
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Index
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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V
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W
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X
A
alias_filter() (pyleoclim.utils.wavelet.AliasFilter method)
AliasFilter (class in pyleoclim.utils.wavelet)
angle_sig() (in module pyleoclim.utils.wavelet)
angle_stats() (in module pyleoclim.utils.wavelet)
annualize() (in module pyleoclim.utils.tsutils)
anti_alias() (pyleoclim.core.psds.MultiplePSD method)
(pyleoclim.core.psds.PSD method)
append() (pyleoclim.core.multipleseries.MultipleSeries method)
ar1_fit() (in module pyleoclim.utils.tsmodel)
ar1_fit_evenly() (in module pyleoclim.utils.tsmodel)
ar1_fit_ml() (in module pyleoclim.utils.tsmodel)
ar1_model() (in module pyleoclim.utils.tsmodel)
ar1_sim() (in module pyleoclim.utils.tsmodel)
ar1_sim_geneva() (in module pyleoclim.utils.tsmodel)
assertPositiveInt() (in module pyleoclim.utils.wavelet)
association() (in module pyleoclim.utils.correlation)
B
beta2Hurst() (in module pyleoclim.utils.spectral)
beta_est() (pyleoclim.core.psds.MultiplePSD method)
(pyleoclim.core.psds.PSD method)
beta_estimation() (in module pyleoclim.utils.spectral)
bin() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
boundary_conditions() (in module pyleoclim.utils.emd_utils)
butterworth() (in module pyleoclim.utils.filter)
C
calculate_distances() (in module pyleoclim.utils.tsutils)
calculate_overlapping_sets() (in module pyleoclim.utils.plotting)
CaseInsensitiveDict (class in pyleoclim.utils.lipdutils)
causality() (pyleoclim.core.series.Series method)
center() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.series.Series method)
checkTimeAxis() (in module pyleoclim.utils.lipdutils)
checkXaxis() (in module pyleoclim.utils.lipdutils)
chisquare_inv() (in module pyleoclim.utils.wavelet)
chisquare_solve() (in module pyleoclim.utils.wavelet)
chronEnsembleToPaleo() (pyleoclim.core.lipdseries.LipdSeries method)
clean() (pyleoclim.core.series.Series method)
clean_ts() (in module pyleoclim.utils.tsbase)
closefig() (in module pyleoclim.utils.plotting)
Coherence (class in pyleoclim.core.coherence)
colored_noise() (in module pyleoclim.utils.tsmodel)
colored_noise_2regimes() (in module pyleoclim.utils.tsmodel)
common_time() (pyleoclim.core.multipleseries.MultipleSeries method)
compute_dist() (in module pyleoclim.utils.mapping)
convert_datetime_index_to_time() (in module pyleoclim.utils.tsbase)
convert_time_unit() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
copy() (pyleoclim.core.coherence.Coherence method)
(pyleoclim.core.corr.Corr method)
(pyleoclim.core.correns.CorrEns method)
(pyleoclim.core.lipd.Lipd method)
(pyleoclim.core.lipdseries.LipdSeries method)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.psds.MultiplePSD method)
(pyleoclim.core.psds.PSD method)
(pyleoclim.core.scalograms.MultipleScalogram method)
(pyleoclim.core.scalograms.Scalogram method)
(pyleoclim.core.series.Series method)
(pyleoclim.core.ssares.SsaRes method)
Corr (class in pyleoclim.core.corr)
corr_isopersist() (in module pyleoclim.utils.correlation)
corr_isospec() (in module pyleoclim.utils.correlation)
corr_sig() (in module pyleoclim.utils.correlation)
corr_ttest() (in module pyleoclim.utils.correlation)
correlation() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
CorrEns (class in pyleoclim.core.correns)
cov_shrink_rblw() (in module pyleoclim.utils.correlation)
cwt() (in module pyleoclim.utils.wavelet)
cwt_coherence() (in module pyleoclim.utils.wavelet)
cwt_psd() (in module pyleoclim.utils.spectral)
D
dashboard() (pyleoclim.core.coherence.Coherence method)
(pyleoclim.core.geoseries.GeoSeries method)
(pyleoclim.core.lipdseries.LipdSeries method)
datetime_index (pyleoclim.core.series.Series property)
decompose() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
detect_outliers_DBSCAN() (in module pyleoclim.utils.tsutils)
detect_outliers_kmeans() (in module pyleoclim.utils.tsutils)
detrend() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
disambiguate_time_metadata() (in module pyleoclim.utils.tsbase)
dist_sphere() (in module pyleoclim.utils.mapping)
E
eff_sample_size() (in module pyleoclim.utils.tsutils)
EmpiricalModeDecomposition (class in pyleoclim.utils.tsutils)
EnsembleSeries (class in pyleoclim.core.ensembleseries)
enumerateLipds() (in module pyleoclim.utils.lipdutils)
enumerateTs() (in module pyleoclim.utils.lipdutils)
equal_lengths() (pyleoclim.core.multipleseries.MultipleSeries method)
equals() (pyleoclim.core.series.Series method)
extr() (in module pyleoclim.utils.emd_utils)
extract() (pyleoclim.core.lipd.Lipd method)
F
fdr() (in module pyleoclim.utils.correlation)
fdr_basic() (in module pyleoclim.utils.correlation)
fdr_master() (in module pyleoclim.utils.correlation)
fill_na() (pyleoclim.core.series.Series method)
filter() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
firwin() (in module pyleoclim.utils.filter)
flip() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
freq_vector_log() (in module pyleoclim.utils.wavelet)
freq_vector_lomb_scargle() (in module pyleoclim.utils.wavelet)
freq_vector_nfft() (in module pyleoclim.utils.wavelet)
freq_vector_scale() (in module pyleoclim.utils.wavelet)
freq_vector_welch() (in module pyleoclim.utils.wavelet)
from_csv() (pyleoclim.core.series.Series class method)
from_json() (pyleoclim.core.geoseries.GeoSeries class method)
(pyleoclim.core.multipleseries.MultipleSeries class method)
(pyleoclim.core.series.Series class method)
G
gauss() (in module pyleoclim.utils.tsutils)
gaussianize() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.series.Series method)
gen_ar1_evenly() (in module pyleoclim.utils.tsmodel)
gen_dict_extract() (in module pyleoclim.utils.lipdutils)
gen_ts() (in module pyleoclim.utils.tsmodel)
GeoSeries (class in pyleoclim.core.geoseries)
get_archive_type() (in module pyleoclim.utils.lipdutils)
get_envelops() (in module pyleoclim.utils.emd_utils)
get_label_width() (in module pyleoclim.utils.plotting)
get_wwz_func() (in module pyleoclim.utils.wavelet)
getEnsemble() (in module pyleoclim.utils.lipdutils)
getLipd() (in module pyleoclim.utils.lipdutils)
getMeasurement() (in module pyleoclim.utils.lipdutils)
getMetadata() (pyleoclim.core.lipdseries.LipdSeries method)
getTs() (in module pyleoclim.utils.lipdutils)
gkernel() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
granger_causality() (in module pyleoclim.utils.causality)
H
hightlight_intervals() (in module pyleoclim.utils.plotting)
histplot() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.series.Series method)
I
increments() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.multipleseries.MultipleSeries method)
infer_period_unit_from_time_unit() (in module pyleoclim.utils.plotting)
inst_freq() (in module pyleoclim.utils.emd_utils)
interp() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
io() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
is_evenly_spaced() (in module pyleoclim.utils.tsbase)
(pyleoclim.core.series.Series method)
isEnsemble() (in module pyleoclim.utils.lipdutils)
isMeasurement() (in module pyleoclim.utils.lipdutils)
isModel() (in module pyleoclim.utils.lipdutils)
isopersistent_rn() (in module pyleoclim.utils.tsmodel)
isPyleoclim() (in module pyleoclim.utils.jsonutils)
iterate_through_dict() (in module pyleoclim.utils.jsonutils)
J
json_to_PyleoObj() (in module pyleoclim.utils.jsonutils)
K
keep_decomposing() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
kirchner_basic() (in module pyleoclim.utils.wavelet)
kirchner_f2py() (in module pyleoclim.utils.wavelet)
kirchner_nproc() (in module pyleoclim.utils.wavelet)
kirchner_numba() (in module pyleoclim.utils.wavelet)
L
label_intervals() (in module pyleoclim.utils.plotting)
lanczos() (in module pyleoclim.utils.filter)
liang() (in module pyleoclim.utils.causality)
liang_causality() (in module pyleoclim.utils.causality)
Lipd (class in pyleoclim.core.lipd)
LipdSeries (class in pyleoclim.core.lipdseries)
LipdToOntology() (in module pyleoclim.utils.lipdutils)
lomb_scargle() (in module pyleoclim.utils.spectral)
M
make_annotation_ax() (in module pyleoclim.utils.plotting)
make_coi() (in module pyleoclim.utils.wavelet)
make_even_axis() (in module pyleoclim.utils.tsutils)
make_freq_vector() (in module pyleoclim.utils.wavelet)
make_labels() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.series.Series method)
make_omega() (in module pyleoclim.utils.wavelet)
make_phantom_ax() (in module pyleoclim.utils.plotting)
map() (in module pyleoclim.utils.mapping)
(pyleoclim.core.geoseries.GeoSeries method)
(pyleoclim.core.lipdseries.LipdSeries method)
(pyleoclim.core.multiplegeoseries.MultipleGeoSeries method)
map_neighbors() (pyleoclim.core.geoseries.GeoSeries method)
mapAgeEnsembleToPaleoData() (in module pyleoclim.utils.lipdutils)
mapAllArchive() (pyleoclim.core.lipd.Lipd method)
mapNearRecord() (pyleoclim.core.lipdseries.LipdSeries method)
mean_and_amplitude() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
modelNumber() (in module pyleoclim.utils.lipdutils)
modeplot() (pyleoclim.core.multivardecomp.MultivariateDecomp method)
(pyleoclim.core.ssares.SsaRes method)
module
pyleoclim.utils.causality
pyleoclim.utils.correlation
pyleoclim.utils.decomposition
pyleoclim.utils.emd_utils
pyleoclim.utils.filter
pyleoclim.utils.jsonutils
pyleoclim.utils.lipdutils
pyleoclim.utils.mapping
pyleoclim.utils.plotting
pyleoclim.utils.spectral
pyleoclim.utils.tsbase
pyleoclim.utils.tsmodel
pyleoclim.utils.tsutils
pyleoclim.utils.wavelet
mtm() (in module pyleoclim.utils.spectral)
MultipleGeoSeries (class in pyleoclim.core.multiplegeoseries)
MultiplePSD (class in pyleoclim.core.psds)
MultipleScalogram (class in pyleoclim.core.scalograms)
MultipleSeries (class in pyleoclim.core.multipleseries)
MultivariateDecomp (class in pyleoclim.core.multivardecomp)
N
n_ll_unevenly_spaced_ar1() (in module pyleoclim.utils.tsmodel)
O
objname_to_obj() (in module pyleoclim.utils.jsonutils)
open_json() (in module pyleoclim.utils.jsonutils)
outliers() (pyleoclim.core.series.Series method)
P
parametric_surrogates() (in module pyleoclim.utils.tsmodel)
pca() (pyleoclim.core.multiplegeoseries.MultipleGeoSeries method)
(pyleoclim.core.multipleseries.MultipleSeries method)
periodogram() (in module pyleoclim.utils.spectral)
phase_stats() (pyleoclim.core.coherence.Coherence method)
phaseran() (in module pyleoclim.utils.tsutils)
phaseran2() (in module pyleoclim.utils.tsutils)
pick_proj() (in module pyleoclim.utils.mapping)
plot() (pyleoclim.core.coherence.Coherence method)
(pyleoclim.core.correns.CorrEns method)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.psds.MultiplePSD method)
(pyleoclim.core.psds.PSD method)
(pyleoclim.core.scalograms.Scalogram method)
(pyleoclim.core.series.Series method)
plot_age_depth() (pyleoclim.core.lipdseries.LipdSeries method)
PLOT_DEFAULT (in module pyleoclim.utils.lipdutils)
plot_envelope() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.psds.MultiplePSD method)
plot_scatter_xy() (in module pyleoclim.utils.plotting)
plot_traces() (pyleoclim.core.ensembleseries.EnsembleSeries method)
plot_xy() (in module pyleoclim.utils.plotting)
pre_process_list() (in module pyleoclim.utils.lipdutils)
pre_process_str() (in module pyleoclim.utils.lipdutils)
prepare_wwz() (in module pyleoclim.utils.wavelet)
preprocess() (in module pyleoclim.utils.tsutils)
promptForVariable() (in module pyleoclim.utils.lipdutils)
prop_alt() (in module pyleoclim.utils.correlation)
PSD (class in pyleoclim.core.psds)
psd_ar() (in module pyleoclim.utils.spectral)
psd_fBM() (in module pyleoclim.utils.spectral)
pyleoclim.utils.causality
module
pyleoclim.utils.correlation
module
pyleoclim.utils.decomposition
module
pyleoclim.utils.emd_utils
module
pyleoclim.utils.filter
module
pyleoclim.utils.jsonutils
module
pyleoclim.utils.lipdutils
module
pyleoclim.utils.mapping
module
pyleoclim.utils.plotting
module
pyleoclim.utils.spectral
module
pyleoclim.utils.tsbase
module
pyleoclim.utils.tsmodel
module
pyleoclim.utils.tsutils
module
pyleoclim.utils.wavelet
module
PyleoObj_to_dict() (in module pyleoclim.utils.jsonutils)
PyleoObj_to_json() (in module pyleoclim.utils.jsonutils)
Q
quantiles() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.psds.MultiplePSD method)
(pyleoclim.core.scalograms.MultipleScalogram method)
queryLinkedEarth() (in module pyleoclim.utils.lipdutils)
R
reduce_duplicated_timestamps() (in module pyleoclim.utils.tsbase)
remove() (pyleoclim.core.multipleseries.MultipleSeries method)
remove_outliers() (in module pyleoclim.utils.tsutils)
resample() (pyleoclim.core.geoseries.GeoSeries method)
(pyleoclim.core.series.Series method)
resolution() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
S
savefig() (in module pyleoclim.utils.plotting)
savitzky_golay() (in module pyleoclim.utils.filter)
Scalogram (class in pyleoclim.core.scalograms)
scatter_map() (in module pyleoclim.utils.mapping)
scatter_xy() (in module pyleoclim.utils.plotting)
screeplot() (pyleoclim.core.multivardecomp.MultivariateDecomp method)
(pyleoclim.core.ssares.SsaRes method)
searchVar() (in module pyleoclim.utils.lipdutils)
segment() (pyleoclim.core.geoseries.GeoSeries method)
(pyleoclim.core.series.Series method)
sel() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
Series (class in pyleoclim.core.series)
set_proj() (in module pyleoclim.utils.mapping)
set_style() (in module pyleoclim.utils.plotting)
signif_isopersist() (in module pyleoclim.utils.causality)
signif_isospec() (in module pyleoclim.utils.causality)
signif_test() (pyleoclim.core.coherence.Coherence method)
(pyleoclim.core.psds.PSD method)
(pyleoclim.core.scalograms.Scalogram method)
similar_string() (in module pyleoclim.utils.lipdutils)
simple_stats() (in module pyleoclim.utils.tsutils)
slice() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.series.Series method)
sm_ar1_sim() (in module pyleoclim.utils.tsmodel)
sort() (pyleoclim.core.series.Series method)
sort_ts() (in module pyleoclim.utils.tsbase)
spectral() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
ssa() (in module pyleoclim.utils.decomposition)
(pyleoclim.core.series.Series method)
SsaRes (class in pyleoclim.core.ssares)
stackplot() (pyleoclim.core.ensembleseries.EnsembleSeries method)
(pyleoclim.core.multipleseries.MultipleSeries method)
standardize() (in module pyleoclim.utils.tsutils)
(pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
stats() (pyleoclim.core.series.Series method)
std() (in module pyleoclim.utils.tsutils)
stop_EMD() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
stop_sifting() (pyleoclim.utils.tsutils.EmpiricalModeDecomposition method)
storey() (in module pyleoclim.utils.correlation)
stripes() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
summary_plot() (pyleoclim.core.series.Series method)
surrogates() (pyleoclim.core.series.Series method)
SurrogateSeries (class in pyleoclim.core.surrogateseries)
T
tau_estimation() (in module pyleoclim.utils.tsmodel)
tc_wave_bases() (in module pyleoclim.utils.wavelet)
tc_wave_signif() (in module pyleoclim.utils.wavelet)
tc_wavelet() (in module pyleoclim.utils.wavelet)
time_coverage_plot() (pyleoclim.core.multipleseries.MultipleSeries method)
time_geo_plot() (pyleoclim.core.multiplegeoseries.MultipleGeoSeries method)
time_increments() (in module pyleoclim.utils.tsmodel)
time_to_datetime() (in module pyleoclim.utils.tsbase)
time_unit_to_datum_exp_dir() (in module pyleoclim.utils.tsbase)
timeUnitsCheck() (in module pyleoclim.utils.lipdutils)
to_array() (pyleoclim.core.ensembleseries.EnsembleSeries method)
to_csv() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
to_dataframe() (pyleoclim.core.ensembleseries.EnsembleSeries method)
to_json() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
to_LipdSeries() (pyleoclim.core.lipd.Lipd method)
to_LipdSeriesList() (pyleoclim.core.lipd.Lipd method)
to_pandas() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
to_tso() (pyleoclim.core.lipd.Lipd method)
ts2segments() (in module pyleoclim.utils.tsutils)
ts_pad() (in module pyleoclim.utils.filter)
V
view() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
W
wavelet() (pyleoclim.core.multipleseries.MultipleSeries method)
(pyleoclim.core.series.Series method)
wavelet_coherence() (pyleoclim.core.series.Series method)
welch() (in module pyleoclim.utils.spectral)
whatArchives() (in module pyleoclim.utils.lipdutils)
whatInferredVariables() (in module pyleoclim.utils.lipdutils)
whatInterpretations() (in module pyleoclim.utils.lipdutils)
whatProxyObservations() (in module pyleoclim.utils.lipdutils)
whatProxySensors() (in module pyleoclim.utils.lipdutils)
whichEnsemble() (in module pyleoclim.utils.lipdutils)
whichMeasurement() (in module pyleoclim.utils.lipdutils)
within_distance() (in module pyleoclim.utils.mapping)
wtc() (in module pyleoclim.utils.wavelet)
wwa2psd() (in module pyleoclim.utils.wavelet)
wwz() (in module pyleoclim.utils.wavelet)
wwz_basic() (in module pyleoclim.utils.wavelet)
wwz_coherence() (in module pyleoclim.utils.wavelet)
wwz_nproc() (in module pyleoclim.utils.wavelet)
wwz_psd() (in module pyleoclim.utils.spectral)
X
xAxisTs() (in module pyleoclim.utils.lipdutils)
xwt() (in module pyleoclim.utils.wavelet)
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